DreEX6011114 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27747120-27749301:+
Coord C1 exon
chr5:27747120-27747265
Coord A exon
chr5:27748803-27748955
Coord C2 exon
chr5:27749041-27749301
Length
153 bp
Sequences
Splice sites
3' ss Seq
TAAGTCTCACCTTTTCCCAGATA
3' ss Score
6.66
5' ss Seq
AGGGTAACA
5' ss Score
4.9
Exon sequences
Seq C1 exon
TCCCGACAGTAGACACGACTCGTGCTAATTGGCTGCTGGAGCAGATGGTGAAAGTAAAAAGGCCAGTGGTTCTGGTTGGAGAGTCCGGCACCTCTAAAACAGCCACCATACAGAATTTCCTGAGTAATCTCAATACAGACACGACT
Seq A exon
ATAATGATGACCATCAATTTCTCATCAAGAACAACCTCTATGGACCTGCAGAGGACTCTGGAGGCAAATGTTGAAAAGAGAACCAAGGACACGTTTGGTCCTCCTATGGGCAAAAGGCTCCTTGTCTTTATGGATGACCTCAACATGCCAAGG
Seq C2 exon
GTGGATGAATATGGAACTCAACAACCTATAGCTCTCCTCAAGCTTCTGTTGGACAGGGGTGGCATGTATGACCGAGGAAAAGAACTCAACTATAAACTCATAAAGGACCTGGGCTTCATTGCAGCCATGGGGAAGGCAGGCGGTGGTAGGAATGAAGTGGACCCACGATTCATCTCTCTTTTCAGTGTGTTCAACATCCCCTTCCCTGAGGAGGAATCCCTACATCTCATCTACTCTTCTATTCTAAGAGGACACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'50-47,'50-46,51-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.6=100)
A:
PF127752=AAA_7=FE(18.4=100)
C2:
PF127752=AAA_7=FE(31.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTCGTGCTAATTGGCTG
R:
GCAATGAAGCCCAGGTCCTTT
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]