HsaEX6069945 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124356004-124360038:+
Coord C1 exon
chr12:124356004-124356149
Coord A exon
chr12:124358105-124358257
Coord C2 exon
chr12:124359778-124360038
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATCATCTCTTTCTGCTTCAGATT
3' ss Score
10.84
5' ss Seq
AGGGTAGTT
5' ss Score
2.59
Exon sequences
Seq C1 exon
TTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAAC
Seq A exon
ATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCACCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCCAAGG
Seq C2 exon
GTGGATGAATATGGCACGCAGCAGCCCATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATTGCTGCAATGGGAAAGGCTGGAGGAGGCCGCAATGAAGTTGACCCAAGATTTATTTCGCTATTCAGTGTCTTCAATGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCACACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'48-50,'48-49,49-50=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.6=100)
A:
PF127752=AAA_7=FE(18.4=100)
C2:
PF127752=AAA_7=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACCACTCGGACTACCTG
R:
AGCCAAGGTCTCGAATGCTTT
Band lengths:
252-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)