HsaEX6069945 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123871457-123875491:+
Coord C1 exon
chr12:123871457-123871602
Coord A exon
chr12:123873558-123873710
Coord C2 exon
chr12:123875231-123875491
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATCATCTCTTTCTGCTTCAGATT
3' ss Score
10.84
5' ss Seq
AGGGTAGTT
5' ss Score
2.59
Exon sequences
Seq C1 exon
TTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAAC
Seq A exon
ATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCACCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCCAAGG
Seq C2 exon
GTGGATGAATATGGCACGCAGCAGCCCATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATTGCTGCAATGGGAAAGGCTGGAGGAGGCCGCAATGAAGTTGACCCAAGATTTATTTCGCTATTCAGTGTCTTCAATGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCACACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'60-59,'60-58,61-59=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.6=100)
A:
PF127752=AAA_7=FE(18.4=100)
C2:
PF127752=AAA_7=FE(31.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACCACTCGGACTACCTG
R:
AGCCAAGGTCTCGAATGCTTT
Band lengths:
252-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains