BtaEX6072239 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54072811-54084420:-
Coord C1 exon
chr17:54084259-54084420
Coord A exon
chr17:54080700-54080874
Coord C2 exon
chr17:54072811-54072992
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTCTCCCCCAACAGCGG
3' ss Score
11.16
5' ss Seq
CAGGTGACG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTCAGTGCAAGCGTCTGGAGGGAGGCCTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGATGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCGGCTGCTTGCGAGGCCCTACTGGAGGAGATCGCCACAAATACAGCCATAG
Seq A exon
CGGAGGAAAAGAAGAAGCTGGCAGAGGAAAAAGCCATGGAGATAGAGGAGCAGAACAAGATTATCGCGGTGGAGAAGACAGAGGCTGAGACTGCCCTGGCTGAGGTCATGCCCATCCTGGAGGCTGCCAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGATGTGACCGAGATCAG
Seq C2 exon
GTCCTTTGCTAAGCCCCCAAAGCAGGTACAGACGGTCTGCGAATGCATCCTCATCATGAAAGGCTACAAAGAACTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCCAACTTCCTCAGGTCTCTGATGGAAATCGACTTTGATTCCATTACCCAGAGCCAAGTTAAGAACATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'57-62,'57-61,58-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.1=92.7)
A:
PF127772=MT=FE(17.2=100)
C2:
PF127772=MT=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTGCAAGCGTCTGGAG
R:
TGGCGGTTTTCCAGTTGAGTT
Band lengths:
254-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]