GgaEX0004155 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4870176-4871942:-
Coord C1 exon
chr15:4871781-4871942
Coord A exon
chr15:4871044-4871218
Coord C2 exon
chr15:4870176-4870357
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTTACAATTCTTAGCTG
3' ss Score
4.87
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TACAATGCAAACGGCTGGAGGGGGGCCTAGATAAACTGAAGGAAGCTAGTGTGCAGCTGGTTGAGCTGAACAAGAAACTTGCAGAGCAAAAGATCGTGCTAGCAGAAAAATCAGCTGCTTGTGAGGCTTTGTTAAAAGAGATTTCAGCAAACACAGAAGTAG
Seq A exon
CTGAAGCAAAGAAAAAACTGGCTGAAGAAAAAGCTACGGAGATACAGGAACAGAATAGGATTATTGCTATGGAGAAGGCGGCTGCTGAGGCAGCTCTGGCTGAAGTTATGCCTGTTTTAGAAGCTGCCAAACTGGAGCTGCAGAAGCTTGACAAGTCTGATGTTACTGAGATCAG
Seq C2 exon
GTCCTTTGCAAAACCCCCTAAACAGGTGCAAGCTGTTTTGGAATGTGTTCTTATAATGAGGGGGTACAAAGAATTAAACTGGAAGACAGCCAAAGGAATGATGTCAGAGGCAAATTTCCTGCGATCTCTGATGGAATTAGATTTTGATGGAATTACTTACGGCCAAGTGAAATCTGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(18.3=92.7)
A:
PF127772=MT=FE(20.8=100)
C2:
PF127772=MT=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTAGTGTGCAGCTGGTT
R:
TCGCAGGAAATTTGCCTCTGA
Band lengths:
245-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]