MmuEX6021055 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124812561-124814731:+
Coord C1 exon
chr5:124812561-124812722
Coord A exon
chr5:124813822-124813996
Coord C2 exon
chr5:124814550-124814731
Length
175 bp
Sequences
Splice sites
3' ss Seq
AGCCCCTCCCCTCCTTGCAGCGG
3' ss Score
10.41
5' ss Seq
CAGGTCCCA
5' ss Score
-1.05
Exon sequences
Seq C1 exon
CCCAGTGCAAGCGTCTGGAAGGAGGGCTGGACAAGCTGAAGGAGGCGACCATCCAGCTGGACGAGCTGAACCTGAAGCTGGCAGAGCAGAAGATCGTCCTGGCCGAGAAGTCAGCCGCCTGCGAGGCCCTGCTGGAGGAAATCGCCACCAACACAGCCATAG
Seq A exon
CGGAGGAGAAGAAGAAGCTGGCAGAGGAGAAGGCCATAGAGATCGAAGAGCAGAACAAGATCATCGCTGTCGAGAAGGCCGAGGCTGAGACAGCTCTGGCTGAGGTCATGCCCATCCTGGAGGCTGCCAAACTAGAGCTGCAGAAGCTGGACAAGTCCGACGTGACTGAAATCAG
Seq C2 exon
GTCATTCGCGAAGCCCCCGAAGCAAGTGCAGACAGTCTGTGAGTGCATCCTCATCATGAAAGGCTACAAGGAGCTTAACTGGAAAACTGCCAAGGGCATGATGTCCGACCCCAACTTCTTGAGGTCCCTGATGGAAATCGACTTCGATTCCATCACCCAGGGTCAAGTGAAGAACATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'62-68,'62-67,69-68=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.1=92.7)
A:
PF127772=MT=FE(17.2=100)
C2:
PF127772=MT=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCAGAAGATCGTCCTG
R:
ACTTGACCCTGGGTGATGGAA
Band lengths:
250-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types