DreEX6011106 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27756228-27758037:+
Coord C1 exon
chr5:27756228-27756389
Coord A exon
chr5:27757193-27757367
Coord C2 exon
chr5:27757856-27758037
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTAAATGATGTCTCTTTCAGCGG
3' ss Score
7.32
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CACAATATAAACGCCTCGAAGGGGGTTTGGATAAGCTGAAGGAGGCGAGTGGGCAGCTAGCAGAGCTCAACGTCAAGCTTGACGAGCAGAAAGTTGTGCTGGCAGAGAAGACTTCAGCCTGTGAGATCCTTCTAGAAGAGATCTGCGCTAACACCGCTGTCG
Seq A exon
CGGAAGAGAAGAAAACCCTGGCGGAGGAGAAGGCTAAAGAAATAGAGGAGCAGAATAAGGTGATAGTGGTGGAGAAGAAGGATGCTGAGAGCTCTTTAGCTGAAGCTCTTCCTGCTTTAGAGGCCGCTCGCATCGCCCTGCAAGACCTAGACAAAAGTGATGTCACAGAAATCAG
Seq C2 exon
ATCCTTCACCAAACCACCTAAACAGGTGCAGACTGTGTGCGAGTGCATCCTTGTCATTCGGGGCTATAAAGAGATCAACTGGAAGACAGCCAAGGGCATGATGTCAGAGGGCAACTTCCTGCGCTCGCTTATGGAAATGGACTGTGACTCTATCAACGCCAATCAAGTAAAACATGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'61-59,'61-58,62-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.1=92.7)
A:
PF127772=MT=FE(17.2=100)
C2:
PF127772=MT=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAAGCTGAAGGAGGCGA
R:
CCTCTGACATCATGCCCTTGG
Band lengths:
245-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]