HsaEX6069936 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123898653-123909442:+
Coord C1 exon
chr12:123898653-123898814
Coord A exon
chr12:123902939-123903113
Coord C2 exon
chr12:123909261-123909442
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCCCCTGTCCTACCCTGCAGCCG
3' ss Score
10.95
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
CTCAGTGCAAGCGTCTGGATGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGCTGTAG
Seq A exon
CCGAGGAGAAGAAGAAACTGGCAGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAAGTCATTGCCATGGAGAAGGCCGAGGCCGAGACGACCCTGGCAGAGGTCATGCCCATCCTGGAGGCCGCCAAGCTGGAACTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAG
Seq C2 exon
GTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTGAACTGGAAAACAGCCAAGGGCGTGATGTCCGACCCGAATTTCCTGCGGTCTCTGATGGAGATTGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'74-73,'74-71,76-73
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.1=92.7)
A:
PF127772=MT=FE(17.2=100)
C2:
PF127772=MT=FE(18.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGACAAGCTGAAGGAGG
R:
AAATTCGGGTCGGACATCACG
Band lengths:
255-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains