GgaEX0004155 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4916838-4918604:-
Coord C1 exon
chr15:4918443-4918604
Coord A exon
chr15:4917706-4917880
Coord C2 exon
chr15:4916838-4917019
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTTACAATTCTTAGCTG
3' ss Score
4.87
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TACAATGCAAACGGCTGGAGGGGGGCCTAGATAAACTGAAGGAAGCTAGTGTGCAGCTGGTTGAGCTGAACAAGAAACTTGCAGAGCAAAAGATCGTGCTAGCAGAAAAATCAGCTGCTTGTGAGGCTTTGTTAAAAGAGATTTCAGCAAACACAGAAGTAG
Seq A exon
CTGAAGCAAAGAAAAAACTGGCTGAAGAAAAAGCTACGGAGATACAGGAACAGAATAGGATTATTGCTATGGAGAAGGCGGCTGCTGAGGCAGCTCTGGCTGAAGTTATGCCTGTTTTAGAAGCTGCCAAACTGGAGCTGCAGAAGCTTGACAAGTCTGATGTTACTGAGATCAG
Seq C2 exon
GTCCTTTGCAAAACCCCCTAAACAGGTGCAAGCTGTTTTGGAATGTGTTCTTATAATGAGGGGGTACAAAGAATTAAACTGGAAGACAGCCAAAGGAATGATGTCAGAGGCAAATTTCCTGCGATCTCTGATGGAATTAGATTTTGATGGAATTACTTACGGCCAAGTGAAATCTGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'55-55,'55-54,56-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.1=92.7)
A:
PF127772=MT=FE(17.2=100)
C2:
PF127772=MT=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTAGTGTGCAGCTGGTT
R:
TCGCAGGAAATTTGCCTCTGA
Band lengths:
245-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]