BtaEX6073847 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71771703-71869654:+
Coord C1 exon
chr17:71771703-71772358
Coord A exon
chr17:71797027-71797235
Coord C2 exon
chr17:71869398-71869654
Length
209 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTCGCATCCCACAGAAA
3' ss Score
10.75
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
CAGCTTCAGCCGGTGCCCCAGCCTCAGCGGGAGCTGGTGTCAGAACAGGTGTTGGAGCCAGTTTCTGAGCGGGCGCCAGGATCGGAGCCTGAGCCCAAGAAGATGTCTGAGCCCAGGCCAGGGTTCAGACAGGAACTGGAACTGTTGCCGGCGCTGGGGACTGGGTCAGGGCCCCGGGAAGAGTGGGGCTCAAACCCGGGGCCTGGGCCCCCCACCAAGGCCCCCTTTGAGCAGGTGCCGGCGCTGGGGCCAGCAGTGGGGAGCGTGCCCCTGATCAAACCTGAGTCAGGGTTGTTGCCGGCATCAAAGGACCCGCGCCCGGGGCAGGTGAAAACACACCTTGGGATGGCAGTGCCCCGGAGCAGCTCGCCGGGCGTTGTCCCCATGGTCTCACTTCCTCTGGACAACTTCAAGGGCTGGCTTCTCAAGTGGACCAACTATCTGAAGGGCTACCAGCGCCGCTGGTTCGTGCTCAGCAATGGCCTCCTGTCTTACTACAG
Seq A exon
AAATCAGGGGGAAATGGCCCACACCTGCCGTGGCACCATCAACCTGTTCACCGCGCACTTCGACACGGAGGACTCTTGCGGTATCGTGCTGACCAGTGGGGGCAGGACCTACCACCTCAAGGCCGGCTCGGAGGTGGAGCGGCAGCAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAGGGCTGTCCGCATGATGAGCAACCACTCAG
Seq C2 exon
ATGACTCTGGGGACGACGAGGACGGGACCCCCTCCCCAGCCGACAAGAGCGAGCTCCACAGCACCATCAAGAGCCTCTCGCTGAAGCTGGACGACCTCAGCACATGCAATGAGCTCGTGGCCAAGCACGGCGTGGCGCTGCAGCGCTCCCTGAACGAGCTGGACGGCCTCCGGATCCCAGCTGAGAGCAGCGAGAAGCTGAAGGCAGTCAACGAGCGGGCCACCCTCTTCCGCATCACGTCCAATGCGATGATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.616 A=0.085 C2=0.267
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(34.1=14.2)
A:
PF0016924=PH=PD(64.8=83.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCCTGATCAAACCTGAG
R:
CTTGATGGTGCTGTGGAGCTC
Band lengths:
307-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]