MmuEX0033181 @ mm9
Exon Skipping
Gene
ENSMUSG00000020435 | Osbp2
Description
oxysterol binding protein 2 [Source:MGI Symbol;Acc:MGI:1921559]
Coordinates
chr11:3626322-3763906:-
Coord C1 exon
chr11:3763236-3763906
Coord A exon
chr11:3719840-3720048
Coord C2 exon
chr11:3626322-3626578
Length
209 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTTGAATCTCACAGAAA
3' ss Score
7.59
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
TCAGGACCAGCGTCAAAGCCTCAGCTCCAGCCTGTGCAGGCACCAGAGCGGGAGTTGCTGTCGAAACAGGTGTGCCAGCCAATTTCTGAGCCGGCGTCGAGATCCGAACCTGGGTCCCAGACGACGTCTGTGCCAAGGCCTTCAGGGGTTGGGCAGGAATCGGAACTACAGGGCTTGTGGCCGGGGTCAGAGAACGGCACAAGGTCTGTGTCCATCATCAAAGCTTCGCCAGAGCTGGCAATGCCGTCCCCGCTGCAGTCAACAGTAGGGAGTTTGCCCGTCACCAAACCCGAGTCCAAGCTGGTGCCAAAGACCCAGTCTTTTCTGCGACAAGGACAGGCGAAGATTTCTGTCGGGACTCCGGTGTCAGGGATTGGTGTCCAAATGGTCTCACCACCTCTGGACAGCTACAAGGGTTGGCTCCTCAAGTGGACTAACTACCTGAAGGGCTACCAGCGCCGTTGGTTCGTGCTCGGCAATGGCCTGCTGTCCTACTACAG
Seq A exon
AAACCAGGGTGAAATGGCCCACACCTGCCGTGCGACCATCAACTTGGCCTCCACACACTTTGAAACAGAGGACTCTTGTGGAATCCTTCTATGCAACGGGGCAAGGACCTACCACCTCAAGGCCAGCTCAGAGGTGGACCGGCAGCATTGGATCACCGCTCTGGAGCTGGCCAAGGCCAAGGCTATCCGTGTGATGAAAACTCAGTCAG
Seq C2 exon
ATGATTCTGGGGACGACGACGAAGAGCCTGCTGCCCCAGCTGACAACAGTGAACTCCACCACACTCTTAAGACCCTCTCACTGAAGTTAAATGACCTCAGCACGTGCAATGACCTCATTGCCAAGCATGGCGCTGCCCTCCAGCGCTCCCTGAATGAGCTGGACAGCCTCAAGATCCCATCAGAGTGCGGGGAGAAACTGAAGGTTGTGAACGAGCGGGCCACCCTCTTCCGCATCACATCAAATGCTATGATCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020435-'0-6,'0-0,1-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=0.056 C2=0.216
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(32.2=13.2)
A:
PF154091=PH_8=PD(66.7=81.7)
C2:
PF045528=Sigma54_DBD=PU(62.8=88.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTACAAGGGTTGGCTC
R:
GTTTCTCCCCGCACTCTGATG
Band lengths:
296-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: