GgaEX0011018 @ galGal4
Exon Skipping
Gene
ENSGALG00000007758 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10718750-10762511:-
Coord C1 exon
chr15:10761980-10762511
Coord A exon
chr15:10742922-10743130
Coord C2 exon
chr15:10718750-10719000
Length
209 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTGTTCCCTTGCAGGAC
3' ss Score
13.58
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GACGCCGCACCCCGAGAGGCTGAGGGGCCGCGCGCCCTTCCCGCCCCGCCGCCAGGGGGCGCTCTCGCCGCGCGCCTCCTCACGTGCCCGCCTCCTCTCTGTGCCCCCCCCGCTCCTTCTCCGCGTGACGTGTGCGCGGCGCCGCCCCGCGCCGGTGCCGGCAGAGCGCGGCGCAGCGTCTCGGGGCCGCGGGGCCGCGCCGCGGGGTCTATGGGGAAGGCGGCCGCGCTGTGCAGCGGCAGCACCCGCGGGCTGGTCTCCCTGCTCAGCGCCGTCCCTTGCTTGGCCTGCCACGAGCTGCCGGGCCCCGGCCGCCGCGCCATGAGCGCGGAGACGGCGGGAGCGGGGGGCCGGGGCGGCGGCGGGGCGGCGGCGGGGGGAGCGCCTGCAGCGCCGGGCTCCGACACCTACAAGGGCTGGCTCTTCAAGTGGACCAACTACCTGAAGGGCTACCAGCGCCGCTGGTTCGTGCTCAGCAACGGGCTGCTCAGCTACTACAG
Seq A exon
GACGCAGGCGGAGATGGCCCACACGTGCCGTGGGACCATCAACCTGTCAACAGCTCACATCGACACCGAGGACTCGTGCAACATTGTGCTGTCCAACGGGGGCAGGACGTACCACCTGAAGGCCAGCTCGGAAGTGGAGAGGCAGCGCTGGGTCACGGCACTGGAGCTGGCCAAGGCGAAAGCCATCCGCATGAGGAACAACCAGTCAG
Seq C2 exon
ATGACTCGGGTGACGAGGAGCCCGCCTCGCAGTCAGACAAGAGCGAGCTGCACGGCACGCTGAAAACCCTCTCGAGTAAGCTGGAGGACCTGAGCACTTGCAATGACCTGATTGCCAAGCACGGGGCGGCCCTGCAGCGCTCGCTCAGCGAGCTGGAGAACCTGAAACTGCCAGCTGAGAGCGGCGAGAAGATCAAGGCTGTGAATGAGCGAGCCACGCTCTTCCGCATCACCTCCAATGCTATGATCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-'2-5,'2-1,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.042 C2=0.310
Domain overlap (PFAM):
C1:
PF154131=PH_11=PU(85.7=30.9)
A:
PF0016924=PH=PD(64.8=83.1)
C2:
NO
Main Skipping Isoform:
ENSGALT00000012578fB10189
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCTGGCTCTTCAAGTG
R:
CTCGCTCATTCACAGCCTTGA
Band lengths:
303-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]