DreEX0006472 @ danRer10
Exon Skipping
Gene
ENSDARG00000022772 | OSBP2 (1 of 2)
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr5:24108478-24208605:-
Coord C1 exon
chr5:24208195-24208605
Coord A exon
chr5:24172989-24173197
Coord C2 exon
chr5:24108478-24108728
Length
209 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTGATCATGGCAGGAC
3' ss Score
7.21
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGAGAAAGTGCGCTGTTTCACTCTATCTCTATCTCTCTGCCCCATACCATCCTTCTCGTCCTCCTCAGCAGCCCGTCCATCTCAGCGCATCGGCGGCGAGTTTATGGGGAGAGTGGCCGCTCCCTGCAATAACGGCCCCGGCAGGATCGTGTCCTTTCTCACCGCAGTCCCGTGTTTATCCTGCAAACAGCAGCAGCAGCGGCGGCAGCAACACCATCAGTCTGCGGCAGTGGAGCGGGGCAGGAGGAGGATGAGCGAGCAGGGCAAGAGTGCCGCGTCCACGCCGGCGAGCGGGACACCAGCCCCGGGCTCGGACACCTACAAAGGCTGGCTCTTTAAATGGACTAACTACATCAAGGGTTACCAGCGCAGATGGTTCGTGCTCAGCAATGGACTGCTGTCCTATTACAG
Seq A exon
GACGCAGGCAGAGATGGCCCATACGTGTCGCGGCACTATCAACCTTGCCACAGCGCACATCGACACCGAAGATGCCTGCAATATTGTTCTGAGCAGTGGAGGGCGCACTTACCATCTGAAAGCCAGCACAGAGGTGGAAAGGCAGAGATGGGTCACAGCGCTGGAGCTGGCCAAGGCAAAAGCCATCCGCATGATGAATGATCAGTCCG
Seq C2 exon
ATGACTCTGCAGACGAGGAGCCCACCTCTCAGTCAGACCACAGTGAGATCCAGGGCACGTTGAAGACTCTGGCCAGTAAACTAGACGATTTGAGCACATGCAATGAGCTGATAGCCAAGCACGGAGCAGCTCTGCAGAGATCTCTGAGTGAGCTCGAAACCTTACGTGTGCCTCTGGAAGGAGGAGAGAAGATAAAGGCTGTCAACGAGAGAGCCACACTCTTTCGCATCACCTCCAATGCTATGATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022772-'0-9,'0-1,1-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.398 A=0.049 C2=0.308
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(32.2=27.2)
A:
PF154091=PH_8=PD(66.7=81.7)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTTTCTCACCGCAGTC
R:
TGTGGTCTGACTGAGAGGTGG
Band lengths:
305-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]