GgaEX0011018 @ galGal3
Exon Skipping
Gene
ENSGALG00000007758 | F1NRB3_CHICK
Description
NA
Coordinates
chr15:11055119-11098975:-
Coord C1 exon
chr15:11098776-11098975
Coord A exon
chr15:11079291-11079499
Coord C2 exon
chr15:11055119-11055369
Length
209 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTGTTCCCTTGCAGGAC
3' ss Score
13.58
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
CCGGGCCCCGGCCGCCGCGCCATGAGCGCGGAGACGGCGGGAGCGGGGGGCCGGGGCGGCGGCGGGGCGGCGGCGGGGGGAGCGCCTGCAGCGCCGGGCTCCGACACCTACAAGGGCTGGCTCTTCAAGTGGACCAACTACCTGAAGGGCTACCAGCGCCGCTGGTTCGTGCTCAGCAACGGGCTGCTCAGCTACTACAG
Seq A exon
GACGCAGGCGGAGATGGCCCACACGTGCCGTGGGACCATCAACCTGTCAACAGCTCACATCGACACCGAGGACTCGTGCAACATTGTGCTGTCCAACGGGGGCAGGACGTACCACCTGAAGGCCAGCTCGGAAGTGGAGAGGCAGCGCTGGGTCACGGCACTGGAGCTGGCCAAGGCGAAAGCCATCCGCATGAGGAACAACCAGTCAG
Seq C2 exon
ATGACTCGGGTGACGAGGAGCCCGCCTCGCAGTCAGACAAGAGCGAGCTGCACGGCACGCTGAAAACCCTCTCGAGTAAGCTGGAGGACCTGAGCACTTGCAATGACCTGATTGCCAAGCACGGGGCGGCCCTGCAGCGCTCGCTCAGCGAGCTGGAGAACCTGAAACTGCCAGCTGAGAGCGGCGAGAAGATCAAGGCTGTGAATGAGCGAGCCACGCTCTTCCGCATCACCTCCAATGCTATGATCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=0.085 C2=0.310
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(34.1=46.3)
A:
PF0016924=PH=PD(64.8=83.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCTGGCTCTTCAAGTG
R:
CTCGCTCATTCACAGCCTTGA
Band lengths:
303-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]