BtaEX6074452 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017746 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001178379]
Coordinates
chr20:489625-507045:-
Coord C1 exon
chr20:506975-507045
Coord A exon
chr20:499498-499661
Coord C2 exon
chr20:489625-489766
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCCCCCGCTCCCAGGCG
3' ss Score
10.06
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACCCTCAACAACAACAACATCAGCCGCATCCTGGTCACCAGCTTCAACCACATGCCGAAGATTCGAACCTT
Seq A exon
GCGCCTCCACTCCAACCACCTGTACTGTGACTGCCACCTGGCCTGGCTCTCGGACTGGCTGCGACAGCGGCGGACCGTCGGCCCGTTCACTCTCTGCATGGCTCCTGTGCACCTGCGGGGCTTCAACGTGGCAGACGTGCAGAAGAAGGAGTACGTGTGCTCAG
Seq C2 exon
GCCCCCACTCAGAGCCTCCAGCCTGCAATGCCAACTCCATTTCCTGCCCTTCAGCCTGCACTTGCAGTAATAACATCGTGGACTGTCGAGGGAAGGGCCTGACAGAGATTCCCGCCAACTTGCCAGAGGGCATCGTTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017746-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(74.2=95.8)
A:
PF138551=LRR_8=PD(22.6=12.5),PF0146319=LRRCT=WD(100=46.4)
C2:
PF0146213=LRRNT=WD(100=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACAACAACAACATCAGCCG
R:
ATTTCAACGATGCCCTCTGG
Band lengths:
210-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]