MmuEX6084757 @ mm9
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35378127-35392609:+
Coord C1 exon
chr11:35378127-35378198
Coord A exon
chr11:35384070-35384233
Coord C2 exon
chr11:35392468-35392609
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTCCTTCTCCAAGGCG
3' ss Score
7.93
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CACCCTCAACAATAACAACATCAGCCGCATCCTGGTCACCAGCTTCAACCACATGCCGAAGATCCGGACTCT
Seq A exon
GCGTCTACACTCCAACCACCTGTACTGTGACTGTCATTTGGCCTGGCTCTCAGATTGGCTGCGACAACGGCGGACCATTGGCCAGTTCACCCTCTGCATGGCACCTGTGCACCTGAGAGGCTTCAGTGTAGCAGATGTGCAGAAGAAAGAGTATGTGTGTCCAG
Seq C2 exon
GTCCCCACTCGGAGGCTCCAGCCTGCAATGCCAACTCCCTCTCCTGCCCTTCCGCTTGCTCATGCAGTAATAACATTGTGGACTGCCGAGGGAAAGGACTGACAGAGATCCCTGCCAACCTGCCAGAGGGCATCGTGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(51.1=100)
A:
PF127992=LRR_4=PD(36.2=30.4),PF0146319=LRRCT=WD(100=46.4)
C2:
PF0146213=LRRNT=WD(100=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACAATAACAACATCAGCCGC
R:
ATTTCCACGATGCCCTCTGG
Band lengths:
210-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: