DreEX0073495 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24285015-24294291:-
Coord C1 exon
chr14:24294220-24294291
Coord A exon
chr14:24292148-24292311
Coord C2 exon
chr14:24285015-24285086
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCTCTCTCTCCAGTCG
3' ss Score
11.78
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CACTCTCAACAACAACAATATCACCCTCATCCCACTGTCAAGCTTCAACCACATGCCAAAGCTGCGGACACT
Seq A exon
TCGCCTGCACTCCAACAACCTGCACTGCGACTGCCACCTGTCCTGGCTCTCTGATTGGCTGCGGCAGAGGAGGGGTTTGGCCCCTTTCACACAGTGCATGGCCCCCGCCCATATGAGAGGTCTCAATGTCCCTGATGTTCAAAAGAGAGAATTTGTTTGCACAG
Seq C2 exon
CCGTCTGGAGCAGAACATGATCAAGAACATCCCAGCAGGAGCCTTCTCCACATACAAGAAACTCAAGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268_MULTIEX1-5/6=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF133061=LRR_5=PD(16.3=88.0)
A:
PF138551=LRR_8=PD(11.5=12.5)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTCAACAACAACAATATCACCC
R:
TTGAGTTTCTTGTATGTGGAGAAGGC
Band lengths:
138-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]