GgaEX6011078 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3866085-3883834:+
Coord C1 exon
chr13:3866085-3866156
Coord A exon
chr13:3870462-3870625
Coord C2 exon
chr13:3883693-3883834
Length
164 bp
Sequences
Splice sites
3' ss Seq
GGCTCTTCTCTATGTTGTAGGCG
3' ss Score
8.75
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
TACTCTCAACAACAACAACATCACCCGCATTCCTGTTACCAGTTTCAATCACATGCCAAAGATCAGGACTCT
Seq A exon
GCGGCTGCACTCCAACTTCCTGCACTGCGACTGCCACCTGGCCTGGCTGTCCGACTGGCTGCGGCAGCGACGCACCATCGGGCAGTTCACCTTCTGCCTGGCGCCGGTCAGCCTGCGGGGCTTCCTGGTGGCCGAGGTGCAGAAAAAGGACTTCGTCTGCTCTG
Seq C2 exon
GTTCCCAATCCGAACCACCATCATGCAGTGCCAGTTCCATCACTTGCCCTTCTGCCTGCACCTGCAGCAACAATGTAGTGGATTGTCGAGGAAGGGGCTTAACAGAAATTCCAGCTAACCTACCGGAGGACATTTGGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'9-29,'9-28,11-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5)
C2:
PF0146213=LRRNT=WD(100=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACAACAACAACATCACCCG
R:
ATTTCCCAAATGTCCTCCGGT
Band lengths:
210-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]