RnoEX6046879 @ rn6
Exon Skipping
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20377589-20392169:+
Coord C1 exon
chr10:20377589-20377660
Coord A exon
chr10:20383291-20383454
Coord C2 exon
chr10:20392028-20392169
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCCTTCTCCAAGGCG
3' ss Score
7.95
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CACCCTTAACAACAACAACATCAGCCGTATCCTGGTCACCAGCTTCAACCACATGCCGAAGATCCGGACCCT
Seq A exon
GCGTCTCCACTCCAACCACCTGTACTGTGATTGTCACTTGGCCTGGCTCTCAGACTGGCTGCGACAGCGGCGGACCATTGGCCAGTTCACCCTCTGCATGGCGCCCGTGCACCTGAGAGGCTTCAGTGTAGCAGACGTGCAGAAGAAGGAGTATGTGTGTCCAG
Seq C2 exon
GTCCCCACTCAGAGGCTCCAGCCTGCAATGCCAACTCCCTCTCCTGCCCTTCTGCCTGCTCATGCAGTAATAACATTGTAGACTGCCGTGGGAAGGGACTGACTGAGATCCCTGCCAACCTGCCGGAGGGCATCGTGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5)
C2:
PF0146213=LRRNT=WD(100=58.3)
Main Skipping Isoform:
ENSRNOT00000009714fB13839
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTAACAACAACAACATCAGCCG
R:
ATTTCCACGATGCCCTCCGG
Band lengths:
211-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]