BtaEX6074456 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017746 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001178379]
Coordinates
chr20:438554-451806:-
Coord C1 exon
chr20:451663-451806
Coord A exon
chr20:450084-450247
Coord C2 exon
chr20:438554-438704
Length
164 bp
Sequences
Splice sites
3' ss Seq
AACTCCTGTCCCTCTCGCAGCCA
3' ss Score
8.44
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTCCTCAATGCCAACAAGATCAACTGCCTGCGGGTGAACACGTTCCAGGACCTGCAGAGCCTCAGCCTGCTCTCCCTGTATGACAACAAGCTGCAGACCATCAGCAAGGGGCTCTTTGCCCCTCTGCAGGCCATCCAGACACT
Seq A exon
CCACTTGGCCCAAAACCCGTTCGTGTGCGACTGCCACTTGAGGTGGCTGGCTGACTACCTGCAGGACAACCCCATTGAGACCAGCGGGGCCCGCTGCAGCAGCCCACGCCGGCTGGCCAACAAGCGCATCAGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCAG
Seq C2 exon
GCTCGGAGGATTACCGCAGCAGGTTCAGCAGCGAGTGCTTCATGGACCTCGTGTGCCCAGACAGGTGCCGCTGTGAGGGCACCATCGTGGACTGCTCCAACCAGAAGCTGGCCCGCATCCCCAGCCACCTCCCCGAATACGTCACCGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017746-'10-10,'10-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(61.2=61.2)
A:
PF127992=LRR_4=PD(36.7=32.1)
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(8.1=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAACAAGATCAACTGCCT
R:
CAGCTTCTGGTTGGAGCAGTC
Band lengths:
245-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]