DreEX0073479 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24263343-24270534:-
Coord C1 exon
chr14:24270391-24270534
Coord A exon
chr14:24269894-24270057
Coord C2 exon
chr14:24263343-24263493
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTTGGCGCTCCACAGACA
3' ss Score
6.54
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
ACTGCTGAACGCCAACAAGATCAACTGCCTTCGAGTGAACACTTTCAAAGATCTGCAGAACCTCAACCTGCTGTCCCTCTATGACAACAAACTTCAGACCATCAGCAAAGGCTTGTTCGCTCCTCTGCGTGCCATCAAAACCCT
Seq A exon
ACACCTCGCTCAGAATCCGTTCATGTGTGACTGTCATCTGAAGTGGCTGGCCGACTACCTGTTTGACAATCCAATTGAGACCAGCGGGGCTCGATGCAGCCACCCGCGCCGCCTCGCCAACAAGCGCATCAGCCAGGTCAAGGGCAAGAAGTTTCGCTGCACAG
Seq C2 exon
GTGCGGAGGACTACCGCAGTCGTCTCAGCGGCGAGTGTTTCCAAGACCTGGTTTGTCCCGAACGCTGCCGATGTGAAGGAACAGTAGTGGACTGCTCCAACCTCAAACTCACCAAAATCCCCCCTCACCTTCCTGAGCACACCACTGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268-'18-16,'18-15,19-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(61.7=59.2)
A:
PF127992=LRR_4=PD(36.2=30.4)
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(8.1=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGAACGCCAACAAGAT
R:
GGTGAGTTTGAGGTTGGAGCA
Band lengths:
257-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]