GgaEX6011076 @ galGal3
Exon Skipping
Gene
ENSGALG00000001916 | Q90Z43_CHICK
Description
NA
Coordinates
chr13:4312244-4327478:+
Coord C1 exon
chr13:4312244-4312387
Coord A exon
chr13:4314605-4314768
Coord C2 exon
chr13:4327328-4327478
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACATCCCATCCTTCTCTCAGACA
3' ss Score
7.95
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCTTCTCAATGCCAATAAGATCAACTGTCTGAGGGTAAACACGTTCCAAGGTCTGCATAATCTCAAACTGCTATCTCTTTATGACAACAAATTGCAGACCATCAGCAAGGGGCTCTTTGCACCTCTCCGATCGATCCAAACTCT
Seq A exon
ACATTTAGCTCAGAATCCATTTGTGTGCGACTGCCATTTGAAGTGGCTGGCTGATTACCTGCAGGATAATCCGATAGAAACCAGCGGCGCTCGATGCAGCAATCCGCGTCGCCTTGCCAACAAACGAATCAGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCAG
Seq C2 exon
GGTCAGAGGATTACAGAAGTAAATTCACTGGGAAGTGTTTCATGGATCTTGTCTGTCCTGAGAAGTGTCGCTGTGAGGGAACAGTTGTGGACTGCTCCAACCAAAAGCTAACCCGATTACCCAGCCACCTTCCTGAATATACCACTGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(60.4=59.2)
A:
PF127992=LRR_4=PD(37.5=32.1)
C2:
PF0146213=LRRNT=WD(100=54.9),PF127992=LRR_4=PU(4.8=3.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACGTTCCAAGGTCTGCA
R:
TTCAGGAAGGTGGCTGGGTAA
Band lengths:
245-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]