MmuEX6084751 @ mm10
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35610592-35622158:+
Coord C1 exon
chr11:35610592-35610735
Coord A exon
chr11:35612273-35612436
Coord C2 exon
chr11:35622008-35622158
Length
164 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTGTCCCTCTTTCAGCCA
3' ss Score
7.92
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTCCTCAATGCTAACAAGATCAACTGTCTGCGGGTGAACACCTTCCAGGACCTACAGAACCTCAATCTGCTCTCTCTGTATGACAACAAGTTGCAGACTATCAGCAAAGGGCTCTTCGTTCCACTGCAGTCCATCCAGACCCT
Seq A exon
CCACTTAGCTCAAAACCCATTTGTTTGCGACTGCCACTTGAAGTGGTTGGCTGACTACCTCCAGGACAACCCTATTGAGACAAGCGGGGCCCGCTGCAGCAGCCCACGCCGGCTGGCCAACAAGCGTATCAGCCAGATCAAAAGCAAGAAGTTCCGCTGCTCAG
Seq C2 exon
GCTCTGAGGATTATCGCAACAGATTCAGCAGTGAGTGCTTCATGGACCTAGTGTGCCCTGAAAAGTGCCGCTGTGAGGGCACCATTGTGGACTGCTCCAACCAGAAGCTAGCCCGCATCCCAAGCCACCTCCCTGAATATACCACTGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'39-41,'39-35,40-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3)
A:
NO
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(8.1=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGATCAACTGTCTGCGGG
R:
GCTAGCTTCTGGTTGGAGCAG
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types