RnoEX6046876 @ rn6
Exon Skipping
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20422464-20434006:+
Coord C1 exon
chr10:20422464-20422607
Coord A exon
chr10:20423971-20424134
Coord C2 exon
chr10:20433856-20434006
Length
164 bp
Sequences
Splice sites
3' ss Seq
GCCCCGTGTCCCTCTTTCAGCCA
3' ss Score
9.97
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTCCTCAATGCCAACAAGATCAACTGCCTGCGGGTAAACACCTTCCAGGACCTACAGAACCTCAATCTGCTCTCTCTGTATGACAACAAGTTGCAGACTATCAGCAAAGGGCTCTTTGCTCCGCTGCAGTCCATCCAGACCCT
Seq A exon
CCACTTAGCTCAAAACCCGTTTGTTTGCGACTGCCACTTGAAGTGGTTGGCCGACTACCTCCAGGACAACCCCATTGAGACGAGCGGGGCCCGCTGCAGCAGCCCACGCCGGCTGGCCAACAAGCGCATCAGCCAGATCAAAAGCAAGAAGTTCCGCTGCTCAG
Seq C2 exon
GCTCGGAGGATTATCGCAACAGATTCAGCAGCGAGTGCTTCATGGACCTAGTGTGCCCCGAGAAGTGCCGTTGTGAGGGCACCATTGTGGACTGCTCCAACCAGAAGCTCTCCCGCATCCCGAGCCACCTCCCTGAATATACCACTGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377-'13-16,'13-14,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(60.4=59.2)
A:
PF127992=LRR_4=PD(37.5=32.1)
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(8.1=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAACAAGATCAACTGCCT
R:
GAGCTTCTGGTTGGAGCAGTC
Band lengths:
245-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]