BtaEX6075913 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56541211-56546956:+
Coord C1 exon
chr20:56541211-56542068
Coord A exon
chr20:56542978-56543101
Coord C2 exon
chr20:56546713-56546956
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTACCCTGGTTCAGTTT
3' ss Score
7.28
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGGGCGCCGGGGCGGAGAAGCCCAGCTTCAACTTCAGCCAGCCCTACCCAGAGGAGGAGGAGGTGGATGAGGGCTTCGAGGCTGACGACGATGCGTTCAAGGACTCGCCCAACCCCAGCGAGCACGGCCACTCAGACCAGCGCACCAGCGGCATCCGGACCAGCGACGAGTCCTCGGAGGAGGACCCCTACATGAACGACACCGTGGTGCCCACCAGCCCCAGCGCTGACAGCACCGTGCTGCTGGCCCCCTCGGAGCACGACTCCTCCGCCGGGGAGCCCACCTACTGCCTGCCCCAGACCCCGGGGGCCCTGCCCGCCCCAGAGGGCGACTACGATTACGATCAAGATGACTACGAGGACGGGGCCATCACCTCCGGCAGCAGCGTGACCTTCTCCAACTCCTGCAGCAGCCAGTGGTCCCCAGACTACCGATGCTCCGTGGGCACCTACAACAGCTCGGGGGCCTACCGGTTCAGCTCGGAGGGCGCTCAGTCCTCG
Seq A exon
TTTGAAGATAGTGAAGAGGACTTCGATTCTCGGTTTGATACAGACGACGAGCTTTCGTACCGGCGGGACTCTGTGTACAGCTGTGTCACGCTGCCTTACTTCCATAGCTTCCTGTACATGAAAG
Seq C2 exon
GTGGCCTCATGAACTCCTGGAAGCGCCGCTGGTGCGTGCTCAAGGACGAGACGTTCCTGTGGTTCCGCTCCAAGCAGGAGGCCCTCAAGCAAGGCTGGCTGCACAAGAAGGGTGGCGGCTCCTCCACCCTATCCAGGAGAAACTGGAAGAAGCGCTGGTTCGTCCTCCGCCAGGCCAAGCTGATGTACTTCGAGAACGACAGCGAGGAGAAGCTCAAGGGCACCGTGGAGGTCCGGGCGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'44-42,'44-40,46-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.601 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(25.0=23.8)
C2:
PF0016924=PH=PD(72.5=35.4),PF0016924=PH=PU(55.1=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTTCTCCAACTCCTGCA
R:
TCTCCTGGATAGGGTGGAGGA
Band lengths:
253-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]