GgaEX7002061 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75609834-75613158:+
Coord C1 exon
chr2:75609834-75610736
Coord A exon
chr2:75611536-75611659
Coord C2 exon
chr2:75612915-75613158
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCCTTTCTTTCATAGTTC
3' ss Score
10.24
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCAGCCAGCCGTATCCTGAGGAGGAGGTAGATGAGGGCTTTGAAGCTGATGACGATGCATTTAAGGATTCACCCAATCCAAGTGAGCACGGCCATTCTGATCAGAGGACCAGTGGCATCAGAACAAGCGATGATTCCTCAGAAGAGGATCCGTATATGAATGACACTGTGGTGCCAACAATTCCTGCTGCTAGCAACACCATGCTTATACCTCCTACCCATGATACAGTCAGTCTTCACAACTCTTCAAGTGGCGAATCTACATACTGCATGCCAGAAAACGTATCATGTAGACCACCAGACTCTGTGGAACTTATTTCTCCAGATGGAGACTATGATTACGACCAAGATGATTACGAAGATGGTGCTATTACTTCTGGTAGCAGTGTGACCTTCTCTAATTCGCACAGTAGCCAGTGGTCACCGGACTATCGGTGCTCAGTGGGGACATACAATAGCTCTGGAGCATACAGGTTTAGTTCTGAAGGAGCTCAGTCTTCT
Seq A exon
TTCGAAGACAGTGAAGAAGATTTTGACTCCAGGTTTGATACAGATGATGAACTTTCCTACCGGAGGGATTCCGTCTACAGCTGTGTTAGCCTGCCCTACTTTCACAGCTTTCTGTACATGAAAG
Seq C2 exon
GTGGCTTAATAAACACATGGAAACGACGCTGGTGTGTCCTGAAAGATGAGACCTTCCTGTGGTTTCGCTCCAAGCAGGAAGCACTTAAGCAGGGTTGGCTTCACAAAAAGGGGGGTGGATCATCTACTCTTTCCAGAAGGAACTGGAAGAAACGATGGTTTGTTCTCAGGCAGTCCAGGTTGATGTACTTTGAAAATGACAGTGAAGAAAAGCTGAAGGGTTCTATTGATGTCCGAACGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'42-40,'42-39,43-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0520311=Hom_end_hint=FE(56.7=100)
A:
PF0520311=Hom_end_hint=FE(7.8=100),PF0016924=PH=PU(25.0=23.8)
C2:
PF0520311=Hom_end_hint=FE(15.3=100),PF0016924=PH=PD(72.5=35.4),PF0016924=PH=PU(55.1=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCAGACTCTGTGGAACT
R:
ATCTTTCAGGACACACCAGCG
Band lengths:
255-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]