MmuEX6052931 @ mm10
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25780974-25786046:+
Coord C1 exon
chr15:25780974-25781864
Coord A exon
chr15:25782918-25783041
Coord C2 exon
chr15:25785803-25786046
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTCTCCTCATCCAGTTT
3' ss Score
9.27
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGCCAAACTTCAACTTCAGCCAGCCCTACCCCGCGGAGGAGGAGGTGGACGAGGGCTTCGAGGCGGATGACGACGCCTTCAAGGACTCGCCCAACCCCAGCGAGCACGGCCACTCCGACCAGCGAACGAGTGGCATCCGGACGAGCGACGACTCATCCGAGGAGGACCCTTACATGAACTACACGGTGGTGCCCACCAGCCCCAGTGCCGACAGTACGGTGCTTCTTGCTGCGTCCATGCAGGACTCCGCTAGCCTGCACAACTCCTCGAGTGGGGAGTCCACCTACTGCATGCCGCAGAACAACGGCGACCTGCCCTCCCCCGACGGCGACTATGACTATGACCAGGACGATTACGAGGATGGCGCCATCACGTCAGGCAGCAGCGTGACTTTCTCCAACTCCTATGGAAGCCAGTGGTCCCCCGACTACAGGTATTCCGTGGGAACCTACAACAGTTCCGGAGCGTACCGGTTCAGCTCAGAAGGGGCGCAGTCCTCC
Seq A exon
TTTGAAGACAGCGAGGAGGACTTCGACTCCAGGTTTGATACAGATGATGAACTTTCCTACCGGCGAGACTCTGTGTATAGCTGCGTCACACTGCCCTATTTCCACAGTTTTCTGTACATGAAAG
Seq C2 exon
GTGGCTTAATGAACTCCTGGAAGCGCCGCTGGTGTGTCCTGAAGGACGAGACCTTCCTGTGGTTCCGCTCCAAGCAGGAAGCCCTCAAGCAAGGCTGGCTGCACAAGAAAGGCGGGGGCTCCTCCACGCTGTCCCGGAGGAACTGGAAGAAGCGCTGGTTTGTCCTTCGCCAGTCGAAGCTGATGTACTTTGAAAACGATAGCGAGGAGAAGCTCAAGGGCACCGTGGAAGTCCGCACCGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'51-55,'51-52,62-55=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.599 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(25.0=23.8)
C2:
PF0016924=PH=PD(72.5=35.4),PF0016924=PH=PU(55.1=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGACTACAGGTATTCCGT
R:
AGGACAAACCAGCGCTTCTTC
Band lengths:
245-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types