MmuEX6052931 @ mm9
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25710729-25715801:+
Coord C1 exon
chr15:25710729-25711619
Coord A exon
chr15:25712673-25712796
Coord C2 exon
chr15:25715558-25715801
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTCTCCTCATCCAGTTT
3' ss Score
9.27
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGCCAAACTTCAACTTCAGCCAGCCCTACCCCGCGGAGGAGGAGGTGGACGAGGGCTTCGAGGCGGATGACGACGCCTTCAAGGACTCGCCCAACCCCAGCGAGCACGGCCACTCCGACCAGCGAACGAGTGGCATCCGGACGAGCGACGACTCATCCGAGGAGGACCCTTACATGAACTACACGGTGGTGCCCACCAGCCCCAGTGCCGACAGTACGGTGCTTCTTGCTGCGTCCATGCAGGACTCCGCTAGCCTGCACAACTCCTCGAGTGGGGAGTCCACCTACTGCATGCCGCAGAACAACGGCGACCTGCCCTCCCCCGACGGCGACTATGACTATGACCAGGACGATTACGAGGATGGCGCCATCACGTCAGGCAGCAGCGTGACTTTCTCCAACTCCTATGGAAGCCAGTGGTCCCCCGACTACAGGTATTCCGTGGGAACCTACAACAGTTCCGGAGCGTACCGGTTCAGCTCAGAAGGGGCGCAGTCCTCC
Seq A exon
TTTGAAGACAGCGAGGAGGACTTCGACTCCAGGTTTGATACAGATGATGAACTTTCCTACCGGCGAGACTCTGTGTATAGCTGCGTCACACTGCCCTATTTCCACAGTTTTCTGTACATGAAAG
Seq C2 exon
GTGGCTTAATGAACTCCTGGAAGCGCCGCTGGTGTGTCCTGAAGGACGAGACCTTCCTGTGGTTCCGCTCCAAGCAGGAAGCCCTCAAGCAAGGCTGGCTGCACAAGAAAGGCGGGGGCTCCTCCACGCTGTCCCGGAGGAACTGGAAGAAGCGCTGGTTTGTCCTTCGCCAGTCGAAGCTGATGTACTTTGAAAACGATAGCGAGGAGAAGCTCAAGGGCACCGTGGAAGTCCGCACCGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'45-40,'45-39,46-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF117163=MDMPI_N=PD(33.0=44.0)
A:
PF0016924=PH=PU(25.0=23.8)
C2:
PF0016924=PH=PD(72.5=35.4),PF0016924=PH=PU(55.1=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGACTACAGGTATTCCGT
R:
AGGACAAACCAGCGCTTCTTC
Band lengths:
245-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: