DreEX6028688 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42775234-42778610:-
Coord C1 exon
chr2:42777690-42778610
Coord A exon
chr2:42776460-42776580
Coord C2 exon
chr2:42775234-42775477
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTCTCTCTCTCAGTTT
3' ss Score
11.55
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCTCGCTCGGGGGATCTGGAGGATCACAGCAGGGCTCCCCTAGAGGGGAAGAAGATGAAGTGGATGAAGGTCTGGGAGTGGACGAAGATGGGTTTAAAGATTCTCCAAACCCCAGTGAACATGGTCACTCTGATGGACAGCGAACCAGCGGTATAAGAACCAGCGACGATTCATCAGAAGAGGATCCTTATGCTAATGACCGCGTGGCCCTGCCCCCAGTCCTGCCCCTTATTATGCCCTCAGTTTATCGTGCTCCGCCCTCCAGCAGTGGCTCCACCTATTCTCATGCTGTTCTGGAGGAGGAGACGGAGCTTATCCCTCCCGATGAGGACTCGGATTATGATGCGGACGATTATGATGAAGGAGGTCTGATCATGCGGCCGCCCAGTCTCCCGCCTCATAATGACATCTGGTCACGCGAGAACCGCAGCTCGTTGGCAACAAGTGCCAGTGTGAGTTCAGGCGCGTATCGATTCAGCTCAGATGGCCCACAGTCCTCG
Seq A exon
TTTGAGGACAGTGAAGATGACTTTGACAGGTTTGACACTGATGATGAATCGTCTTACCGGAGGGACTCAGTCTACAGCTGTGTTACTCTCCCATACTTCCACAGTTTCCTTTATATTAAAG
Seq C2 exon
GTGGCTTGTTGAACTCATGGAAGCGTCGTTGGTGTGTGCTGAAGGATGAGACATTTCTGTGGTTCAGGAGCCGACAGGAGGCTCTGAAACAGGGCTGGCTGATGAAGAAGGGCGGAGGCTCCTCCACACTGTCCCGCCGCAACTGGAGGCGCCGCTGGTTCGTTCTGAGACAGAGCAAACTCATTTACTACGAGAATGACACCGAGGAGAGGATGAAAGGCATGCTGGACATGCACGAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'30-26,'30-25,31-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.749 A=0.195 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(25.0=24.4)
C2:
PF0016924=PH=PD(72.5=35.4),PF0016924=PH=PU(55.1=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTCTGGAGGAGGAGAC
R:
CCAACGACGCTTCCATGAGTT
Band lengths:
246-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]