RnoEX0057148 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78038671-78043775:+
Coord C1 exon
chr2:78038671-78039555
Coord A exon
chr2:78040850-78040973
Coord C2 exon
chr2:78043532-78043775
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTCTCCTTGTCCAGTTT
3' ss Score
9.5
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGAAGCCAAATTTCAACTTCAGCCAGCCCTACCCGGAGGAGGAGGTGGACGAGGGCTTCGAGGCTGATGACGATGCCTTCAAAGACTCACCCAACCCCAGTGAGCATGGCCACTCTGACCAGCGGACCAGTGGCATCCGGACCAGCGACGACTCCTCTGAGGAGGACCCTTACATGAACTACACGGTGGTGCCCACCAGCCCCAGTGCCGACAGCACAGTGCTGCTTGCTGCCTCTGTGCAGGACTCTGCCAGCCTGCACAACTCCTCCAGCGGGGAGTCCACGTACTGCATGCCGCAGAACAACGGGGACCTGCCCTCCCCCGATGGCGACTATGACTATGACCAGGACGATTATGAGGATGGCGCCATTACCTCAGGCAGCAGCGTGACATTCTCCAACTCCTACGGGAGCCAGTGGTCCCCAGACTATAGGTATTCCGTGGGGACCTACAACAGTTCCGGAGCGTACCGGTTCAGCTCAGAAGGAGCGCAGTCCTCC
Seq A exon
TTTGAAGATAGTGAAGAGGACTTCGACTCGAGGTTTGATACGGATGATGAGCTCTCCTACCGGCGAGACTCTGTGTATAGCTGCGTCACACTGCCCTATTTCCACAGTTTCCTGTACATGAAAG
Seq C2 exon
GCGGCTTAATGAACTCCTGGAAGCGCCGCTGGTGTGTCCTGAAGGATGAGACCTTCCTGTGGTTCCGCTCCAAGCAGGAAGCCCTCAAGCAAGGCTGGCTGCACAAGAAAGGCGGGGGCTCCTCCACACTGTCCCGGCGGAACTGGAAGAAGCGCTGGTTTGTTCTCCGCCAGTCCAAGCTGATGTACTTTGAAAACGACAGTGAGGAGAAGCTCAAGGGCACCGTGGAAGTCCGCTCAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'42-40,'42-38,43-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(25.0=23.8)
C2:
PF0016924=PH=PD(72.5=35.4),PF0016924=PH=PU(55.1=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTGGTCCCCAGACTATA
R:
AACAAACCAGCGCTTCTTCCA
Band lengths:
253-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]