BtaEX6075916 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56537940-56540191:+
Coord C1 exon
chr20:56537940-56538046
Coord A exon
chr20:56538874-56539107
Coord C2 exon
chr20:56540146-56540191
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTTTCGTTCTCATTTTTCAGAAA
3' ss Score
11.52
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGTTCCTTCGTGAGTCCTTGGAGCAGAAACTGGAGAAGCGACGGGAAGAGGAGGTGACGCGGGCGGCCATGGTGATCCGGGCCCACGTCTTGGGCTACTTGGCAAG
Seq A exon
AAAGCAATACAAGAAGGTCCTTGATTGTGTAGTGATCATACAGAAGAACTACAGGGCCTTCCTCCTGAGGAGGAGATTTTTGCACCTGAAAAAAGCAGCTGTGGTTTTCCAGAAGCAACTCCGAGGTCAGATTGCCAGAAGAGTTTACAGACAACTGCTGGCAGAGAAACGAGCAGAGGAGGAAAAGAGGAAACGGGAAGAGGAAGAAAAGAGGAAACGGGAGGAGGAGGAAAG
Seq C2 exon
AGAAAGAGAGAGGGAACGAAGAGAAGCGGAGCTCCGCGCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'41-37,'41-36,42-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.241 C2=0.938
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.5=8.3),PF0061222=IQ=PU(76.2=44.4)
A:
PF0061222=IQ=PD(19.0=5.1),PF0061222=IQ=WD(100=26.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCTTCGTGAGTCCTTGG
R:
GAGCTCCGCTTCTCTTCGTTC
Band lengths:
140-374
Functional annotations
There are 2 annotated functions for this event
PMID: 20731332
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: comigration in gel electrophoresis, competition binding. ELM ID: ELMI001883; ELM sequence: LYCVVIIQKNYRAFLLRRRF; Overlap: FULL
PMID: 20731332
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: comigration in gel electrophoresis, competition binding. ELM ID: ELMI001884; ELM sequence: KKAAIVFQKQLRGQIARRVY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]