GgaEX7002063 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75607786-75609423:+
Coord C1 exon
chr2:75607786-75607892
Coord A exon
chr2:75608892-75609101
Coord C2 exon
chr2:75609384-75609423
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTCCAAAAA
3' ss Score
2.72
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GTTTTTCTCCGGGAGTCCTTGGAACACAAGTTAGAGAAGCAGCGAGAGGTGGAAGTCACCAAGGCAGCAATGATTATCCGAGCACACATCTTAGGTTACGCAGCCCG
Seq A exon
AAAGAGGTATAGAAAGGTTCTATACTATGTGGTTGTGATACAAAAGAACTACAGAGCATTCTCGAGTAGGAAAAGGTTCCTTTGCCTGAAAAAGGCAGCCATAGTTCTTCAAAAGCAGCGTCGAGGCCAGATTGCTCGACGTGTTTTCAGGGAAAGACTAGAGGAGAAGCGGAGACAAGAGGAAGAAAGAAGAAAAGAGGAAGAAGAAAG
Seq C2 exon
GGAAAGACAAAGGCAAGAAGCAGAGCGTCTTGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'39-36,'39-35,40-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.155 C2=0.929
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.5=8.3),PF0520311=Hom_end_hint=PU(0.2=2.8)
A:
PF0520311=Hom_end_hint=FE(13.2=100)
C2:
PF0520311=Hom_end_hint=FE(2.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTTCTCCGGGAGTCCTTGG
R:
GCAAGACGCTCTGCTTCTT
Band lengths:
140-350
Functional annotations
There are 2 annotated functions for this event
PMID: 20731332
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: comigration in gel electrophoresis, competition binding. ELM ID: ELMI001883; ELM sequence: LYCVVIIQKNYRAFLLRRRF; Overlap: FULL
PMID: 20731332
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: comigration in gel electrophoresis, competition binding. ELM ID: ELMI001884; ELM sequence: KKAAIVFQKQLRGQIARRVY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]