MmuEX6052934 @ mm9
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25707836-25710167:+
Coord C1 exon
chr15:25707836-25707942
Coord A exon
chr15:25709338-25709565
Coord C2 exon
chr15:25710119-25710167
Length
228 bp
Sequences
Splice sites
3' ss Seq
CTGGCCGCTCTCTCTTGCAGAAA
3' ss Score
12.09
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTTCCTTCGAGAATCCTTGGAGCAGAAACTGGAAAAGAGGCGGGAAGAGGAGATTGACCGTGCGGCCATGGTGATCCGAGCTCACATCTTAGGCTACTTGGCACG
Seq A exon
AAAGCAATATAGAAAGGTCCTCTGTGGTGTGGTGACCATACAGAAGAATTACAGAGCTTTCCTTGCGAGGAAGAAATTTTTGCACCTGAAAAAGGCAGCCATCGTGTTCCAGAAGCAACTGCGAGGACAGCTGGCACGCAGGGTTTACAGGCAGCTGTTGGCTGAGAAACGGGAGCTGGAGGAAAAGAAGAGGCGGGAGGAAGAGAAGAAGAGAGAGGAAGAGGAAAG
Seq C2 exon
AGAAAGAGAGCGAGCGCAAAGAGAAGCTGACCTCCTCCGTGCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'35-37,'35-35,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.863
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(3.5=8.3),PF0061222=IQ=PU(76.2=44.4),PF060886=TLP-20=PU(11.2=38.9)
A:
PF0006316=Myosin_head=PD(7.2=7.8),PF0061222=IQ=PD(19.0=5.2),PF0061222=IQ=WD(100=26.0),PF0061222=IQ=WD(100=27.3),PF117163=MDMPI_N=PU(50.0=64.9)
C2:
PF060886=TLP-20=PD(12.7=81.2),PF130251=DUF3886=PD(22.6=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCTTCGAGAATCCTTGGA
R:
CTGATGGGCACGGAGGAGG
Band lengths:
156-384
Functional annotations
There are 2 annotated functions for this event
PMID: 20731332
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: comigration in gel electrophoresis, competition binding. ELM ID: ELMI001883; ELM sequence: LYCVVIIQKNYRAFLLRRRF; Overlap: FULL
PMID: 20731332
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: comigration in gel electrophoresis, competition binding. ELM ID: ELMI001884; ELM sequence: KKAAIVFQKQLRGQIARRVY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: