BtaEX6076036 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59378945-59396576:+
Coord C1 exon
chr20:59378945-59379169
Coord A exon
chr20:59380559-59380731
Coord C2 exon
chr20:59396398-59396576
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATACACCTTCTGCATTTCAGTGT
3' ss Score
6.55
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTTGGATTATTAGGAATTCAAATGATATGGACACGGGATTCAGAAGAGGCCCTTCGAAATGCCAAGTTTGATAAAAAAATCATGCAGAAAACCAATCAGTCTTTCCTGGAGCTACTGACCACGTTGATAGACATGACAACCAAGGACCTGAGCTCCGTGGAGCGAGTTAAATATGAGACTCTGATTACTATTCATGTGCACCAGCGAGATATCTTTGATGACCTG
Seq A exon
TGTCACATGCATATCAAGAGCCCTTCGGACTTTGAGTGGCTGAAACAGTGCAGGTTTTATTTTAACGAAGATTCTGACAAGATGATGGTTCACATCACAGACGTGCCATTCATCTACCAGAATGAATTTCTAGGCTGCACTGACAGGCTTGTCATAACACCGCTCACAGACAG
Seq C2 exon
GTGTTACATCACACTGGCTCAAGCTCTGGGCATGAGCATGGGGGGTGCCCCCGCTGGTCCTGCAGGAACAGGAAAAACAGAAACGACCAAAGATATGGGACGGTGTCTTGGGAAATACGTCGTGGTTTTCAATTGTTCAGATCAGATGGATTTCCGAGGACTTGGACGGATTTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'35-35,'35-34,36-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.164
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=32.8)
C2:
PF127742=AAA_6=FE(25.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCAAGGACCTGAGCTCC
R:
CGTCCAAGTCCTCGGAAATCC
Band lengths:
258-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]