MmuEX6053063 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28241914-28256453:+
Coord C1 exon
chr15:28241914-28242138
Coord A exon
chr15:28243495-28243667
Coord C2 exon
chr15:28256275-28256453
Length
173 bp
Sequences
Splice sites
3' ss Seq
GGCACACCTTTGAATTTCAGTGT
3' ss Score
4.81
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTTGGATTATTAGGAATTCAGATGCTATGGACCCGGGACTCAGAAGAAGCCCTTCGAAATGCCAAGTTTGATAAGAAAATCATGCAGAAGACCAATCAGGCCTTCCTAGAGCTACTGAACATGCTGATCGAGATTACCACGAAGGACCTGAGCTCCATGGAACGGGTTAAATACGAGACTCTGATTACTATCCATGTGCACCAAAGGGACATCTTTGATGACCTG
Seq A exon
TGTCACATGCACGTCAAGAGCCCTACGGACTTTGAATGGCTGAAACAGTGCAGGTTCTATTTTAAGGAGGATTCTGACAAGACGATGATCCACATCACCGACGTGGCTTTCATATACCAGAATGAGTTTTTAGGCTGCACTGACAGACTTGTCATAACACCGCTCACGGACAG
Seq C2 exon
GTGCTATATCACATTGGCTCAAGCTCTGGGCATGAGCATGGGAGGAGCCCCTGCTGGTCCCGCAGGGACAGGCAAGACAGAGACCACCAAGGACATGGGCCGATGTCTTGGGAAATATGTTGTAGTTTTCAACTGCTCGGACCAGATGGATTTCCGAGGACTTGGGCGGATATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'33-34,'33-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=32.8)
C2:
PF127742=AAA_6=FE(25.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCACGAAGGACCTGAGCT
R:
GGAAATCCATCTGGTCCGAGC
Band lengths:
247-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: