GgaEX6020590 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76639286-76642148:+
Coord C1 exon
chr2:76639286-76639510
Coord A exon
chr2:76640778-76640950
Coord C2 exon
chr2:76641970-76642148
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTTTTTTTAAGGTT
3' ss Score
11.94
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
GTTGGGTTGTTAGGGATCCAAATGATTTGGACAAGAGACTCAGAAGAAGCTTTGACTAACGCCAGGTATGATAAAAAAATTATGCGAAAGACAAACCAGTTTTTCCTGGATCTTCTAAACACATTGATTGATATGACAACAAAAGACCTTAACCCAGTCGAACGAATTAAATATGAGACATTAATCACTATTCATGTGCATCAGAGGGACATCTTTGATGGTCTG
Seq A exon
GTTTGCATGCATATTAAGAGTCCTACAGACTTCGAGTGGCTGAAACAGTGTAGATTTTATTTTAATGAAGACTCTGATAAAATGCTGATTAATATCACTGATGTGGGTTTTACATACCAGAATGAATTCTTGGGCTGTACTGACAGGCTTGTCATCACACCTCTTACAGACAG
Seq C2 exon
ATGTTACATCACTCTGGCTCAAGCTTTAGGCATGAATATGGGTGGAGCACCTGTGGGGCCTGCAGGAACTGGTAAAACTGAAACCATCAAAGATATGGGACGGTGCCTTGGTAAATATGTAGTTGTCTTCAACTGTTCAGATCAGATGGATTTTCGAGGACTTGGGAGGATCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'34-40,'34-39,35-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=32.8)
C2:
PF127742=AAA_6=FE(25.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTTTGACTAACGCCAGGT
R:
TTTTACCAGTTCCTGCAGGCC
Band lengths:
256-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]