GgaEX6020590 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78545239-78548098:+
Coord C1 exon
chr2:78545239-78545463
Coord A exon
chr2:78546729-78546901
Coord C2 exon
chr2:78547920-78548098
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTTTTTTTTTAAGGTT
3' ss Score
12.09
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
GTTGGGTTGTTAGGGATCCAAATGATTTGGACAAGAGACTCAGAAGAAGCTTTGACTAACGCCAGGTATGATAAAAAAATTATGCGAAAGACAAACCAGTTTTTCCTGGATCTTCTAAACACATTGATTGATATGACAACAAAAGACCTTAACCCAGTCGAACGAATTAAATATGAGACATTAATCACTATTCATGTGCATCAGAGGGACATCTTTGATGGTCTG
Seq A exon
GTTTGCATGCATATTAAGAGTCCTACAGACTTCGAGTGGCTGAAACAGTGTAGATTTTATTTTAATGAAGACTCTGATAAAATGCTGATTAATATCACTGATGTGGGTTTTACATACCAGAATGAATTCTTGGGCTGTACTGACAGGCTTGTCATCACACCTCTTACAGACAG
Seq C2 exon
ATGTTACATCACTCTGGCTCAAGCTTTAGGCATGAATATGGGTGGAGCACCTGTGGGGCCTGCAGGAACTGGTAAAACTGAAACCATCAAAGATATGGGACGGTGCCTTGGTAAATATGTAGTTGTCTTCAACTGTTCAGATCAGATGGATTTTCGAGGACTTGGGAGGATCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'39-43,'39-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=32.8)
C2:
PF127742=AAA_6=FE(25.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTTTGACTAACGCCAGGT
R:
TTTTACCAGTTCCTGCAGGCC
Band lengths:
256-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]