DreEX6039511 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9234825-9238173:+
Coord C1 exon
chr16:9234825-9235049
Coord A exon
chr16:9236727-9236899
Coord C2 exon
chr16:9237995-9238173
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTCCTGTCACACAGTGT
3' ss Score
7.85
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
GTTGGTTTACTAGGTATCCAGATGATCTGGACAAAGGATTCGGAGGATGCTTTGAGCAATGCCAGATATGACCGGAAGATCATGAGCAAAACCAACCAGTTCTTTCTTGAGCTCCTCAACAATTTGATTGACATGACTACTAAGGACCTTGGAGCTGTTGAACGGACAAAGTATGAAACACTAATCACTATTCATGTACACCAGAGGGACATCTTTGATGATTTG
Seq A exon
TGTCGTTTGCACATCAAAAGCCCCACCGACTTTGAATGGCTGAAACAGTGCCGTTTTTACTTCAATGAGGACTCAGATAAGATGATGATCAACATCACTGATGTGGGCTTTGTGTACCAGAATGAGTTTCTAGGCTGCACTGACAGGCTGGTCATCACTCCCCTCACTGACAG
Seq C2 exon
ATGCTACATTACTTTAGCTCAAGCTCTGGGAATGAGTATGGGAGGAGCTCCAGCTGGGCCAGCAGGAACAGGAAAGACCGAAACTACCAAGGACATGGGCCGCTGTCTGGGCAAATATGTGGTGGTTTTCAATTGTTCTGATCAGATGGACTTTAGAGGCTTGGGAAGAATATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.164
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=32.8)
C2:
PF127742=AAA_6=FE(25.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATGCCAGATATGACCGG
R:
GGTCTTTCCTGTTCCTGCTGG
Band lengths:
250-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]