BtaEX6076065 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017222 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr20:62414784-62427126:+
Coord C1 exon
chr20:62414784-62414915
Coord A exon
chr20:62421184-62421257
Coord C2 exon
chr20:62426702-62427126
Length
74 bp
Sequences
Splice sites
3' ss Seq
TACTTTTGTTTCCCTTTCAGCTC
3' ss Score
10.72
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CAAGTGCCCCAGCTTCACCTCGGGAAATGATCAGCCTCAAAGAAAGGAAGACAGACTATGAGTCCACCGGCAGCAACGCCACTTACCATGGAACTAAAGGAGAGCACACTTCCAGGAAAGACACCATGACAG
Seq A exon
CTCAAACTACTGGAATTTCAACTTTGTATAGGAATTCATATGGTGCGCCCGCTGAAGACATCAAACATAACCAG
Seq C2 exon
GTTTCAGCACAGCCAGCCCCACAGGAGCCCAGCAGAAAAGACTACGAGACCTACCAGCCGTTTCCGAATTCCACGAGAAACTACGACGAGTCCTTCTTCGAGGACCAGGTCCACCACCGCCCTCCCGCCAGCGAGTACGCCATGCACCTGGGGCTCAAGTCCACCGGCAACTACGTCGACTTCTACTCGGCCGCCCGACCCTACAGCGAACTGAACTATGAAACGAGCCACTACCCGGCCTCCCCCGACTCCTGGGTGTGAGGCGGGCACCCCGGGAACCGTGCATGTGCATGCAGACCACAGACATTGCTATTTTTTTTCCCCCCTGCAAATTTAGTTTGTTAAAGCCTGTTCCATAGGAAGGCTGGGATACCCAGGAAGGAAACATTTAAGAGCTATTTTAGAAAGCTCCATGAACGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017222-'19-31,'19-30,21-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.605
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCGGGAAATGATCAGCC
R:
AAACGGCTGGTAGGTCTCGTA
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]