GgaEX6020617 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:78024020-78033401:+
Coord C1 exon
chr2:78024020-78024097
Coord A exon
chr2:78027089-78027162
Coord C2 exon
chr2:78029791-78033401
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCCGTTTCTCTCTCCCCAGCTC
3' ss Score
10.7
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CAAGAGTCAGCTGCTCACTGAAGCATGGCACAGCAGGAATGGAGTTCCCAGGAATGCCGCCTGCGTGTTCCGAAGCAG
Seq A exon
CTCAGAACACTGGAATCTCAACTTTGTACAGAAATTCTTATGGTGCACCTGCTGAAGATATCAAACATAACCAG
Seq C2 exon
GTTTCAACACAGCCAGTTCCACAGGAGCCCAGCAGAAAAGATTACGAACCATATCAACCGTTTCAGAATTCAACCAGAAACTATGATGAGTCCTTCTTTGAGGACCAAGTGCATCATCGTCCACCTGCAAGTGAATACAACATGCACCTGGGACTAAAGTCAACTGGCAACTACGTCGACTTCTATTCAGCTGCTCGTCCCTATAGTGAACTTAACTATGAAACAAGCCACTATCCAGCCTCTCCCGACTCCTGGGTTTGAGACTTGGGCAGATACAAAAGCTCCAGGAACTGTGCATGTGCATGCATACCACAAGACATTTTTTTCCTGCAAATTTAGTTTGTTAAAGCCTGTTCCATAGGAAGGCCCAGATAACCAGTGTGGAAAAAATTAAGAGATTTTTTTAGAAGGCTAAAAGAAATGAAAGCTAAACCTGGGAGTAATTAGAAAGAAATATATATACTATATATATATTTTACAGCGTAGGACAAATTTAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-'31-40,'31-38,32-40=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=0.960 C2=0.605
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACAGCAGGAATGGAGTTC
R:
GTGGACGATGATGCACTTGGT
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]