GgaEX6020617 @ galGal3
Exon Skipping
Gene
ENSGALG00000013001 | CTNND2
Description
NA
Coordinates
chr2:80079246-80089398:+
Coord C1 exon
chr2:80079246-80079377
Coord A exon
chr2:80086439-80086512
Coord C2 exon
chr2:80089141-80089398
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCCGTTTCTCTCTCCCCAGCTC
3' ss Score
10.7
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CAAGTGCCCCAGCCTCACCTCGGGAAATGATCAGCCTAAAAGAAAGGAAAACAGACTATGAATCAACTGGAACAAATGCCACTTACCATGGAAGTAAGGGGGAACACACTTCTAGGAAAGACACCATGACAG
Seq A exon
CTCAGAACACTGGAATCTCAACTTTGTACAGAAATTCTTATGGTGCACCTGCTGAAGATATCAAACATAACCAG
Seq C2 exon
GTTTCAACACAGCCAGTTCCACAGGAGCCCAGCAGAAAAGATTACGAACCATATCAACCGTTTCAGAATTCAACCAGAAACTATGATGAGTCCTTCTTTGAGGACCAAGTGCATCATCGTCCACCTGCAAGTGAATACAACATGCACCTGGGACTAAAGTCAACTGGCAACTACGTCGACTTCTATTCAGCTGCTCGTCCCTATAGTGAACTTAACTATGAAACAAGCCACTATCCAGCCTCTCCCGACTCCTGGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-'22-29,'22-28,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.990 C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTAAGGGGGAACACACT
R:
GTGGACGATGATGCACTTGGT
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]