MmuEX6053097 @ mm10
Exon Skipping
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:31009033-31029311:+
Coord C1 exon
chr15:31009033-31009164
Coord A exon
chr15:31020701-31020774
Coord C2 exon
chr15:31027412-31029311
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCTTTTCCTTTTAGCTC
3' ss Score
11.01
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CAAGTGCCCCAGCTTCACCTCGGGAAATGATCAGCCTCAAAGAAAGGAAGACGGACTACGAGTCCGCTGGCAACAACGCCACTTACCACGGAACTAAAGGAGAACACACCTCCAGAAAAGACACCATGACAG
Seq A exon
CTCAAAACACTGGAGTTTCAACTTTGTACAGGAATTCATACGGTGCGCCCGCTGAAGACATCAAACAGAACCAG
Seq C2 exon
GTTTCCACACAGCCTGTCCCTCAGGAGCCCAGCAGGAAAGACTACGAGACCTACCAGCCCTTTCCGAATTCCACACGAAATTATGATGAGTCCTTCTTTGAGGACCAGGTCCACCACCGCCCTCCAGCCAGCGAGTACACCATGCACCTGGGCCTCAAGTCCACTGGCAACTATGTCGACTTCTACTCTGCAGCCCGTCCTTACAGTGAACTGAACTATGAAACGAGCCACTACCCGGCCTCGCCCGACTCCTGGGTGTAAGGAGCCAGGACACGAGGCACTCCGGGGACAGTGCATGTGCATGCATACACCACAGGACATTTTGTTTCTTTTTTTCTTTTCTTTTCTTTTGTTTTTTTTTTTCTTTCCCTGCAAATTTAGTTTGTTAAAGCCTGTTCCGTAGGAAGGCTGTGATAACCAGGAAGAAATACTCAGAGCTATTTTAGAAAGCTAAAATGAATCAAGAGTTAACTGGGAAATCGATAGGAAGCTAAACGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240-'61-66,'61-64,64-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCGGGAAATGATCAGCC
R:
AAGGGCTGGTAGGTCTCGTAG
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types