RnoEX0025215 @ rn6
Exon Skipping
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:84080455-84094315:+
Coord C1 exon
chr2:84080455-84080586
Coord A exon
chr2:84085899-84085972
Coord C2 exon
chr2:84093104-84094315
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCTTTTCCTTTTAGCTC
3' ss Score
11.01
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CAAGTGCCCCAGCTTCACCTCGGGAAATGATCAGCCTCAAAGAAAGGAAGACGGACTATGAGTCCGCTGGCAACAGCGCCACTTACCATGGAACTAAAGGAGAGCACACCTCCAGAAAAGACACCATGACAG
Seq A exon
CTCAAAACACTGGAGTTTCAACTTTGTATAGGAATTCATACGGTGCACCCGCTGAAGACATCAAGCAGAACCAG
Seq C2 exon
GTTTCCACACAGCCTGTCCCCCAGGAACCAAGCAGGAAAGACTACGAGACCTACCAGCCCTTCCAGAATTCCACACGAAATTATGATGAGTCCTTCTTTGAGGACCAGGTTCATCACCGCCCTCCAGCGAGCGAGTACACCATGCACCTGGGCCTCAAGTCCACTGGCAACTATGTCGACTTCTACTCCGCTGCCCGTCCTTACAGTGAACTGAACTATGAAACGAGCCACTACCCGGCCTCGCCCGACTCCTGGGTGTGAGGAGTCAGGACACGAGGCACTCTGGGGACAGTGCATGTGCATGCATACACCACAGGACATTCTGTTTCTTTTCTTTTCTTTTCTCTCTTTTTTTTTCTTTCCCTGCAAATTTAGTTTGTTAAAGCCTGTTCCAAAAGGAAGGCTGTGATAACCAGAAAGAAATACTCAGAGCTATTTTAGAAAGCTAAAATGAATCGAGCGTTAACCAGGAAATCGATAGGAAGCTAAACGCAATCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-'42-48,'42-47,45-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.628
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCGGGAAATGATCAGCC
R:
AAGGGCTGGTAGGTCTCGTAG
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]