RnoEX0025214 @ rn6
Exon Skipping
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:84076527-84085972:+
Coord C1 exon
chr2:84076527-84076653
Coord A exon
chr2:84080455-84080586
Coord C2 exon
chr2:84085899-84085972
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTCTCGTGTGCTTTTGTAGCAA
3' ss Score
8.53
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATGGATGGTCACAATATCACTTTGTAGCCTCATCTTCAACCATCGAGAGGGATCGACAAAGGCCCTACTCCTCCTCCCGCACACCTTCCATCTCTCCTGTGCGTGTGTCTCCCAACAACCGATCAG
Seq A exon
CAAGTGCCCCAGCTTCACCTCGGGAAATGATCAGCCTCAAAGAAAGGAAGACGGACTATGAGTCCGCTGGCAACAGCGCCACTTACCATGGAACTAAAGGAGAGCACACCTCCAGAAAAGACACCATGACAG
Seq C2 exon
CTCAAAACACTGGAGTTTCAACTTTGTATAGGAATTCATACGGTGCACCCGCTGAAGACATCAAGCAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-'40-47,'40-45,42-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGTCACAATATCACTTTGT
R:
TCTGCTTGATGTCTTCAGCGG
Band lengths:
194-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]