GgaEX0019677 @ galGal3
Exon Skipping
Gene
ENSGALG00000013001 | CTNND2
Description
NA
Coordinates
chr2:80075547-80086512:+
Coord C1 exon
chr2:80075547-80075673
Coord A exon
chr2:80079246-80079377
Coord C2 exon
chr2:80086439-80086512
Length
132 bp
Sequences
Splice sites
3' ss Seq
AATCCATTTTTATGATCTAGCAA
3' ss Score
5.73
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GACGGATGGTCACAGTATCACTTTGTAGCCTCATCTTCAACGATAGAAAGAGATCGGCAAAGACCATACTCTTCATCACGCACGCCCTCCATCTCTCCCGTGCGCATGTCTCCTAACAACCGCTCAG
Seq A exon
CAAGTGCCCCAGCCTCACCTCGGGAAATGATCAGCCTAAAAGAAAGGAAAACAGACTATGAATCAACTGGAACAAATGCCACTTACCATGGAAGTAAGGGGGAACACACTTCTAGGAAAGACACCATGACAG
Seq C2 exon
CTCAGAACACTGGAATCTCAACTTTGTACAGAAATTCTTATGGTGCACCTGCTGAAGATATCAAACATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-'21-28,'21-24,22-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=1.000 C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGATGGTCACAGTATCACT
R:
TGTTTGATATCTTCAGCAGGTGCA
Band lengths:
194-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]