GgaEX0019677 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:78016197-78027162:+
Coord C1 exon
chr2:78016197-78016323
Coord A exon
chr2:78019896-78020027
Coord C2 exon
chr2:78027089-78027162
Length
132 bp
Sequences
Splice sites
3' ss Seq
AATCCATTTTTATGATCTAGCAA
3' ss Score
5.73
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GACGGATGGTCACAGTATCACTTTGTAGCCTCATCTTCAACGATAGAAAGAGATCGGCAAAGACCATACTCTTCATCACGCACGCCCTCCATCTCTCCCGTGCGCATGTCTCCTAACAACCGCTCAG
Seq A exon
CAAGTGCCCCAGCCTCACCTCGGGAAATGATCAGCCTAAAAGAAAGGAAAACAGACTATGAATCAACTGGAACAAATGCCACTTACCATGGAAGTAAGGGGGAACACACTTCTAGGAAAGACACCATGACAG
Seq C2 exon
CTCAGAACACTGGAATCTCAACTTTGTACAGAAATTCTTATGGTGCACCTGCTGAAGATATCAAACATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001_MULTIEX2-6/8=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.709 A=1.000 C2=0.960
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGATGGTCACAGTATCACT
R:
TGTTTGATATCTTCAGCAGGTGCA
Band lengths:
194-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]