DreEX6027506 @ danRer10
Exon Skipping
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30575897-30580991:-
Coord C1 exon
chr2:30580865-30580991
Coord A exon
chr2:30577667-30577798
Coord C2 exon
chr2:30575897-30575973
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTTTTTGTTTTTTAGCAA
3' ss Score
10.5
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACGGTTATTCTCAGTATCACTTTGTTGGCTCTTCATCTACAATTGAGAGAGACAGACAACGACCTTACTCCTCCTCTCGCACTCCATCTATCTCTCCTGTGCGGACCTCACCCAATAATCGATCAG
Seq A exon
CAAGTGCCCCCACTTCGCCTCGAGAGATGATGAGCTTGAAGGAGAGAAAGACAGATTACGAGTCTACTGGAAGCAACTCTACTTATCATGGAAACAAAGGCGAGCACACCTCCAGAAAAGACGCTATGGCAG
Seq C2 exon
CTCAAATCTCCAGTGGAACATCTACACTGTTCAGAGGTGCTTACATGTCTCCTGCTGATGACATCAAGCATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779-'31-28,'31-27,33-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=1.000 C2=0.808
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTTATTCTCAGTATCACTTTGT
R:
TGGTTATGCTTGATGTCATCAGCA
Band lengths:
202-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]