BtaEX6076066 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017222 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr20:62410503-62421257:+
Coord C1 exon
chr20:62410503-62410629
Coord A exon
chr20:62414784-62414915
Coord C2 exon
chr20:62421184-62421257
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTTCGATTTCTTTATGTAGCAA
3' ss Score
6.45
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACGGATGGTCACAGTATCACTTCGTAGCCTCATCTTCAACCATCGAGAGGGATCGGCAAAGACCCTACTCCTCGTCCCGCACGCCCTCCATCTCCCCCGTGCGCGTGTCCCCCAACAACCGCTCAG
Seq A exon
CAAGTGCCCCAGCTTCACCTCGGGAAATGATCAGCCTCAAAGAAAGGAAGACAGACTATGAGTCCACCGGCAGCAACGCCACTTACCATGGAACTAAAGGAGAGCACACTTCCAGGAAAGACACCATGACAG
Seq C2 exon
CTCAAACTACTGGAATTTCAACTTTGTATAGGAATTCATATGGTGCGCCCGCTGAAGACATCAAACATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017222-'18-30,'18-29,19-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.721 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGATGGTCACAGTATCACT
R:
TGTTTGATGTCTTCAGCGGGC
Band lengths:
194-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]