MmuEX6053098 @ mm10
Exon Skipping
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:31004949-31020774:+
Coord C1 exon
chr15:31004949-31005075
Coord A exon
chr15:31009033-31009164
Coord C2 exon
chr15:31020701-31020774
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTCTCGTGTGTTTATGTAGCAA
3' ss Score
6.82
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATGGATGGTCACAATATCACTTTGTAGCCTCATCTTCAACCATCGAGAGGGATCGACAAAGGCCCTACTCCTCCTCCCGCACACCCTCCATCTCTCCCGTGCGTGTGTCTCCCAACAACCGCTCAG
Seq A exon
CAAGTGCCCCAGCTTCACCTCGGGAAATGATCAGCCTCAAAGAAAGGAAGACGGACTACGAGTCCGCTGGCAACAACGCCACTTACCACGGAACTAAAGGAGAACACACCTCCAGAAAAGACACCATGACAG
Seq C2 exon
CTCAAAACACTGGAGTTTCAACTTTGTACAGGAATTCATACGGTGCGCCCGCTGAAGACATCAAACAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240-'60-64,'60-61,61-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGTCACAATATCACTTTGT
R:
TCTGTTTGATGTCTTCAGCGGG
Band lengths:
194-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types