DreEX0024901 @ danRer10
Exon Skipping
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30570723-30577798:-
Coord C1 exon
chr2:30577667-30577798
Coord A exon
chr2:30575897-30575973
Coord C2 exon
chr2:30570723-30572999
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATAATTCACTGTCTCTGCAGCTC
3' ss Score
8.32
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAAGTGCCCCCACTTCGCCTCGAGAGATGATGAGCTTGAAGGAGAGAAAGACAGATTACGAGTCTACTGGAAGCAACTCTACTTATCATGGAAACAAAGGCGAGCACACCTCCAGAAAAGACGCTATGGCAG
Seq A exon
CTCAAATCTCCAGTGGAACATCTACACTGTTCAGAGGTGCTTACATGTCTCCTGCTGATGACATCAAGCATAACCAG
Seq C2 exon
GTCTCGGCTCAAGGCAACCCTCCAGAGGCCTACCCTCCCTTCCAGACTCCCCCAGGAGCCAACTTCGAGGAGCCGTACTATGAGGACCAAGCGCATAAAAGGCCCCCGCCCGCCGCAGACGGCACCATGCACCTGGGACTGAAGTCCACGGGGAACTACGTGGACTTTTATTCTGCGTCTCGCCCATACAGTGAACTCAACTATGAGACGAGCCACTATCCTGCCTCGCCGGACTCCTGGGTGTAGGGGCAGGCTGGAGGCGGCTGGCAAACAGACACCAGACCAGCATGTGCATGAACACTAGTAGACATCTCACACTCGTAAACCTTCAGTTCGGTTCACTGCTCGCACCACAGTGGCCGGTGAGCACGGTTAGGAAAGTGCTTGGAGATTTTAAGGAAAGACGCGCAAGGAATGCATTTTACCAAACGGATTGCTTGAACTTTAGCATCGGAGGGAATGGAAGAGGGAAAGCGGAAGATACTATATGTGGCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.808 C2=0.630
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCTCCAGAAAAGACGCT
R:
GACTTCAGTCCCAGGTGCATG
Band lengths:
174-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]